News

Burning our bridges? Network analysis reveals trends in freshwater expertise

By Lauren Kuehne

January 8, 2020

As scientists, when we think about conservation problems, it’s often in terms of missing information – “knowledge gaps”, anyone? But the role of expertise – implying not only growth but also continuity in development and application of knowledge – is invariably less emphasized. This may be in part simply due to the tradition of science where knowledge and concepts are built incrementally – think Thomas Kuhn’s notion of normal science. However, it also can stem from more prosaic problems of maintaining research focus in the overburdened, underfunded world of environmental science.

In a new paper just out in BioScience, the Freshwater Ecology Conservation Lab examined expertise in a conservation area close to our hearts, which is assessment of freshwater ecosystems. This new paper follows up on a review published in 2016, in which we examined the way that ecological integrity of freshwater ecosystems have been assessed since passage of the 1972 Clean Water Act. In that review, we found that although methods have been becoming more standardized, there was a disheartening disconnect between assessment and management or policy-making.

Network graphs - then and now
Computational power to analyze networks has changed since the first “sociograms” were developed by psychiatrist J. L. Moreno in 1934 (right), to creating partial maps of the internet circa 2005 (left), but the basic concept of evaluating the strength and direction of relationships between individuals or organizations remains the same.

This finding spurred us to follow up by examining the position and role of expertise in freshwater assessment through time. We sought to answer the question: Which entities and individuals contribute most to this body of knowledge, and how are they collaborating with each other across organizational and ecosystem boundaries? Our goal was to assess the state of expertise – or “human capital” – related to freshwater assessment, expertise that is needed for everything from development of methods to participation in legislative and administrative reforms related to the Clean Water Act.

We used network analysis – a technique first formalized in the 1930s and used frequently in the social sciences – to analyze relationships between authors of grey and peer-reviewed publications related to freshwater assessment. Authors were categorized by their organizational affiliations – i.e., academic, federal government, NGO, etc – allowing us to analyze the frequency of collaborations both within and between organizational types. In network analysis, these are known as bonding (within) and bridging (between) ties, and are good indicators of strong relationships, regular paths of communication, and ability/propensity to collaborate. We also looked at cross-ecosystem exchange by examining ties between research groups working in different types of freshwater systems.

What we found was surprising. By the numbers, academic authors outweigh other groups, but when we looked at centralities – meaning the frequency that authors were connected to and formed a bridge between others – it was authors affiliated with federal agencies that were involved in the largest number of bonding and bridging ties. Authors affiliated with state government, NGOs, and consulting companies also held comparable importance in the network, depending on the type of centrality; for example, despite relatively low numbers, state agency affiliated authors were as prominent in the core network as those associated with universities. And although agencies like the US EPA might be expected in the core network, agencies that were less expected to be playing a role in such assessments, such as the National Park Service and Bureau of Land Management, were also well represented.

Network Graph - freshwater assessment
Network graph of individuals with expertise in assessment of fresh waters since passage of the 1972 Clean Water Act. The network is diverse, but highly fragmented, and with little evidence of increasing connectivity over time, making it vulnerable to loss of key individuals or organizations.

Diversity of the entities contributing to and sustaining expertise and knowledge exchange should be celebrated, but it must also be considered in light of the fact the network as a whole was highly fragmented, with little evidence of becoming less fragmented over time. This means that the network is only tenuously connected, and therefore highly vulnerable to loss of key individuals or groups, which can easily occur due to extended losses in funding or government shutdowns.

Given the war on science and scientists associated with the federal government during the last three years, it seems like a bad punchline to publish research that says those same scientists are the current mainstay of freshwater assessment knowledge and expertise. And although our analysis focused on freshwater assessment, research in other areas of ecology and conservation supports a similarly central role of government agencies in sustaining and building collaboration networks. Conservation science needs information, but we also need expertise and continuity; our goal with this paper was to establish where this expertise currently resides, and where it may need to be fostered and protected in the future. We hope that this study will spur important conversations about the value of knowledge networks in the years to come.

This article was originally published by the Freshwater Ecology Conservation Lab. 

EarthLab Lunch & Learn: Collaborating Across Difference

EarthLab Lunch & Learn Series: Collaborating Across Difference

Join EarthLab for lunch and conversation about the skills needed to collaborate across diverse fields and communities.

Co-sponsored by: Center for Global Studies, JSIS, Center for Health and the Global Environment, Urban@UW, Washington Sea Grant, William D. Ruckelshaus Center

Every month, two or more individuals from different backgrounds will share lessons from their collaborative relationship. Such partnerships might include artists collaborating with scientists, researchers collaborating with community members, academics collaborating with practitioners, and researchers collaborating across wide disciplinary divides, such as the sciences and humanities. Speakers will reflect on challenges and opportunities in their collaboration, specific awareness and skills they have developed in order to collaborate, and recommendations for others attempting similar feats. Each event will last two hours. The first hour will consist of a 20-30 minute panel discussion followed by audience Q&A and socializing. The second hour will be an opportunity for students to meet with the panelists and learn from those who are a few steps ahead about how to become collaborative boundary-crossers. We are kicking off the series December 10th with a member of the EarthLab community. We hope to see you there!

December 10th: A Generosity of Spirit: Bridging academic and management norms to create the Social Science for the Salish Sea research agenda

When: Tuesday, December 10 | 12:30-2:30 p.m.
Where: Fisheries (FSH) 106

Presented by Sara Jo Breslow, Social Science Lead for EarthLab and Leah Kintner, Ecosystem Recovery Manager for the Puget Sound Partnership.

In the past year, the Social Science for the Salish Sea project convened 40 researchers and practitioners from academic, governmental, non-profit and Indigenous organizations in Washington and British Columbia to scope an action-oriented research agenda to inform ecosystem recovery of our region. The project connected researchers and practitioners with different national, cultural, institutional and disciplinary backgrounds as well as different specialized languages, epistemologies, areas of interest, and workplace norms. Coming together to communicate and agree on a collective research agenda required time, patience, flexibility, expansive thinking, and a generosity of spirit. As co-leads, Breslow and Kintner had many conversations where they grappled with different expectations for the project as an academic and a practitioner. Where academics tend to prioritize new ideas, accuracy, and nuance, practitioners are often required to prioritize mandates, timeliness, and ease of communication. They had to find a balance, deciding what they were willing to forego in order to keep working on the project together while also learning that they both contributed expertise and original ideas as well as grappled in practical ways with real-world problems. Breslow and Kintner worked through their differences in order to facilitate the crafting of a research agenda that could both reflect academic and practitioner priorities and leverage support for environmental social science in the region.

Lunch & Learn RSVP

Physical Scientist at UW Climate Impacts Group

The Climate Impacts Group (CIG) at the University of Washington is hiring! Keep your eyes peeled for multiple opportunities to join our team in the coming weeks and months.

Our first need is for a physical scientist to join our team of professional researchers devoted to use-inspired research. We are looking for a person with strong technical skills in manipulating climate model data, interpreting hydrological and meteorological data, and physical process modelling. This position is intended to support the CIG’s senior research staff in work coproduced with our local, state, federal and tribal partners. The CIG is a fast-paced, dynamic, and deadline driven environment, which requires the research scientist to bring strong organizational and project management skills as well as problem-solving and priority-setting abilities.

While we are open to applicants with at least 2 years of experience and a B.S. in computer science, mathematics, engineering, earth sciences or a related field, we would prefer a candidate with more experience (Master’s or PhD). This is a full-time staff scientist research position with no teaching expectations and no path to University tenure. For more details and to apply, go to this link.

Contact: Jason Vogel, jmvogel@uw.edu

Announcing the Future Rivers NRT, a new student program focused on sustaining freshwater services

With essential freshwater ecosystems changing around the world, more interdisciplinary trained scientists are needed to think outside-the-box regarding these changes to help better sustain important resources. To address this need, the University of Washington has been awarded an NSF Research Traineeship grant to initiate an innovative graduate training model. Starting fall of 2020, both M.S. and PhD students will have the opportunity to receive innovative training in data analysis, cultural awareness, science communication, and participate in new interdisciplinary research.

The National Science Foundation Research Traineeship (NRT) award to the University of Washington will develop an innovative, culturally aware STEM trained workforce in freshwater science. Named Future Rivers, this program will prepare Trainees to become fluent in 21st century data science approaches to understand interactions among and within food, water, and energy sectors in order to expand the options for environmental sustainability. Students will learn to work in applied ways within career fields outside of academia to create a solid foundation that connects academic government and industry partners when addressing freshwater issues.

Learn More

Originally published by EarthLab

Fall Freshwater Mixer

Socialize with freshwater colleagues and learn about a unique educational opportunity in interdisciplinary freshwater research.

With the world’s population growing rapidly, the upcoming Future Rivers NRT will provide students with the skillset and experience to sustain food-energy-water services in freshwater ecosystems. Join us for a social event to earn more about the NRT from SAFS professor Gordon Holtgrieve and connect with members of the UW freshwater research community! We’re also pleased to welcome special guest Brian Eyler, who will discuss his new book, “The Last Days of the Mighty Mekong.” Light refreshments and drinks will be provided.

When: Tuesday, October 22, 2019, 4:00 p.m.

Where: Fishery Sciences Building Lobby (FSH) 1122 NE Boat St, Seattle, WA 98105

Who: Students, faculty, staff, and friends of UW — all are welcome!


SPECIAL GUEST:Headshot of Brian Eyler, director of the Stimson Center Southeast Asia program Brian Eyler, Director, Stimson Center Southeast Asia Program

Brian Eyler is an expert on transboundary issues in the Mekong region and specializes in China’s economic cooperation with Southeast Asia. His new book, “The Last Days of the Mighty Mekong,” takes the reader on a journey from glaciers in China to rice fields in Vietnam, stopping along the way in Cambodia, Laos, and Thailand.

Hydrology/Fisheries Faculty Position at Salish Kootenai College (Pablo, MT)

Work for the only Hydrology Bachelor’s degree program at a Tribal College or University!

Salish Kootenai College Department of Hydrology is seeking a full time hydrology instructor with fisheries experience in applied hydrological measurements, fluvial processes, general fisheries biology and hydrological and fisheries management tools for natural and cultural resource management for tribal organizations.

The minimum requirements will be an M.S. (PhD preferred) in Hydrology, Fisheries, Geoscience, or closely related degree.

Apply on the Salish Kootenai College website.

Contact: Dr. Antony Berthelote

Hydrology Department Head

(406) 275-4080

antony_berthelote@skc.edu

Additional Information

eScience Institute Seminar: Joe Hamman, National Center for Atmospheric Research

“Enabling science using open source software, big data platforms, and diverse communities; applications in climate and hydrologic research”

Please join the UW eScience Institute for a special guest seminar by Joe Hamman of the National Center for Atmospheric Research!

When: Thursday, September 19, 3:00 pm – 4:00 pm

Where: WRF Data Science Studio, 6th Floor, Physics/Astronomy Tower

Abstract: Across many data-driven fields, the abundance of data and compute is offering researchers exciting opportunities for scientific discovery. Realizing these discoveries is, however, often impeded by unnecessary constraints on the research process. These constraints stem from a variety of sources, including the complexities of working with very large datasets, and the failure to follow best data science practices. In this talk, I will discuss how open source software, big data platforms, and vibrant and diverse communities are enabling a new paradigm of scientific research. We will explore how this new paradigm is enabling open science and scientific transparency in service of society. I will provide examples from the perspective of climate and hydrologic modeling, demonstrating how pressing challenges in these domains are being addressed through the community development of open software and infrastructure through the Pangeo Project. I will end by highlighting areas in the climate and hydrologic modeling domains where emerging data science methods are likely to play an important role in the research landscape in the coming years.

Bio: Joseph Hamman is a scientist at the National Center for Atmospheric Research (NCAR). He received a PhD in Civil and Environmental Engineering from the University of Washington (2016) and additional postdoctoral training in computational hydrology at NCAR (2016-2018). His work focuses on using emerging data sciences approaches in service of climate and hydrologic modeling research. He has made significant contributions to open source scientific software projects (e.g. Xarray, Dask, Jupyter) and helps lead the Pangeo Project – a community effort for big data in the geosciences.

Software Carpentry Workshop

The Carpentries is a non-profit volunteer organization whose members teach researchers how to use computing tools and tools for management, analysis and visualization of data.

Software Carpentry aims to help researchers get their work done in less time and with less pain by teaching them basic research computing skills. This hands-on workshop will cover basic concepts and tools, including program design, version control, data management, and task automation. Participants will be encouraged to help one another and to apply what they have learned to their own research problems.

Who: The course is aimed at graduate students and other researchers. You don’t need to have any previous knowledge of the tools that will be presented at the workshop.

Where: WRF Data Science Studio, 6th floor Physics/Astronomy Tower, University of Washington, 3910 15th Ave NE, Seattle, WA, 98105.

When: October 1st – 4th, 2019.

Requirements: Participants must bring a laptop with a Mac, Linux, or Windows operating system (not a tablet, Chromebook, etc.) that they have administrative privileges on. They should have a few specific software packages installed, including the Bash shell, Git, a text editor like nano or BBEdit, and Python.

Code of Conduct: Everyone who participates in Carpentries activities is required to conform to the Code of Conduct. This document also outlines how to report an incident if needed.

Accessibility: We are committed to making this workshop accessible to everybody. The workshop organizers have checked that:

  • The room is wheelchair / scooter accessible.
  • Accessible restrooms are available.

Materials will be provided in advance of the workshop and large-print handouts are available if needed by notifying the organizers in advance. If we can help making learning easier for you (e.g. sign-language interpreters, lactation facilities) please get in touch (using contact details below) and we will attempt to provide them.

Contact: Please email arokem@uw.edu for more information.

More Details & Registration

What Drives Resource Integration in Lakes?

By Beka Stiling, MS Candidate, School of Aquatic & Fishery Sciences, University of Washington

Graph depicting the reliance on littoral-benthic resources by rainbow trout. Small populations of trout will use the all of the littoral-benthic habitat. Large populations use more littoral-benthic resources as more habitat is available.
Variability in reliance on littoral-benthic derived resources by rainbow trout may be partially explained by an interaction between rainbow trout population density and littoral zone extent.

Evidence suggests that the integration of energetic pathways via the transfer of resources across habitat boundaries can influence community structure, maintain species biomass, and promote food web stability. Despite our ability to measure resource integration, we do not have a strong understanding of the factors that determine the varying degrees of resource integration that we observe in fish.

In lakes, the carbon that serves as the energetic base of the food web originates in three distinct habitats: pelagic (open water), littoral-benthic (submerged, illuminated edge), and terrestrial (land surrounding the lake). Fish, as mobile consumers, can use resources derived from different habitats, thereby integrating resources from multiple energetic pathways. Floating algae, or phytoplankton, has long been recognized as an important base of aquatic food webs, but increasing evidence points to attached littoral-benthic algae as a substantial contributor of energy to lake food webs as well. Discussions are ongoing about the role of terrestrial carbon, exported from the surrounding watershed into the lake, as a basal resource for aquatic communities.

Attached algae, scrubbed from a rock, is collected on a filter.

My study aims to identify factors that might drive resource integration by rainbow trout in order to better anticipate how alterations to lake littoral habitat from human use and climate change may impact lake ecosystem function in the future. I am testing two potential factors. The first is resource availability. Do fish integrate resource pathways in ratios that reflect the relative extent of the habitats providing carbon to the ecosystem? The second factor is population structure. Does the density of the rainbow trout population influence how fish might rely on different energetic pathways?

To address the challenge of focusing on just two of the many interacting factors that may influence resource integration, I selected study lakes that were similar with respect to climate, geology, human impacts, and species composition, but differed in terms of littoral habitat availability and rainbow trout population structure. From these 17 lakes I collected rainbow trout and samples of primary producers from the pelagic, littoral-benthic, and terrestrial habitats. In the lab I am conducting analyses that leverage naturally occurring differences in molecules formed in these three habitats to elucidate rainbow trout reliance on energy that originated in each habitat.

Map depicting location of the lakes from Stiling's study
The study lakes, located on the western side of the Cascade crest, are naturally fishless mountain lakes stocked with rainbow trout at varying numbers and frequencies, resulting in a gradient of fish population densities.

After I analyzed a subset of my samples, preliminary findings revealed an interaction between habitat availability and rainbow trout density, where at low densities rainbow trout are more reliant on littoral-benthic derived resources regardless of littoral habitat availability, but, as population density increases, reliance on littoral-benthic resources decreases with reduced littoral availability. This interaction between factors suggests that for rainbow trout the utilization of multiple pathways may be a solution to competitive pressure on a preferred resource pathway — an example of how resource integration can contribute to the stability of a top predator population.

Stiling weighs out samples on a microbalance in preparation for stable isotope analysis.

My next steps are to wrap up my lab-based processing and begin to analyze the full complement of my data. I am excited to uncover the full story and see if the trends I found with a subset of my samples persist! I am thankful to the Washington State Lake Protection Association for the Dave Lamb Memorial Scholarship funding that supports this project. The scholarship funding jump-started my field data collection and provides critical assistance for lab-based sample processing.

Beka Stiling is an MS Student in the School of Aquatic and Fishery Sciences at the University of Washington, advised by Julian Olden and Gordon Holtgrieve.

Email: stilir@uw.edu

Twitter: @rebekahstiling

This article was originally published by the Washington State Lake Protection Association (WALPA) in the September 2019 Waterline newsletter.